White dog you're not comparing apples to apples in your statements. Sure a 6V battery in a golf cart sized casing is going to have more juice than many 12V but they aren't the same thing. You can't make broad 6V battery statements based on it. They make 6V batteries in the same size cases as corresponding 12V batteries as well. My 210ah 6V batteries are in a 12.05"x6.65"x8.65" case weight 64lb, that manufacture makes a 12V battery in a 12"x6.6"x8.15" case weighing 68lb and it's 100ah. So as you can see for the same case size it's basically a wash.
I do run/charge my batteries as a pair.
What you say is true enough. But . . .
In the RV industry, manufactures usually install clamps and cases for 12 VDC Group 27 batteries, occasionally the smaller Group 24. The battery industry has standardized case sizes in these groups so they are interchangeable. Using the measurements from Trojan's website (Trojan just happens to be the brand I use), the Group 27 is 12 3/4" X 6 3/4" X 9 3/4". Similarly, their T105 6 VDC, is 10 3/8" X 6 3/4" X 10 3/4, 2" shorter and 1" taller than the 12 VDC Group 27. The Group 27 weighs 55 lbs and the T105 62 lbs. Using the 20 hr. rating, the Group 27 has 105 and the T105 225. Using two Group 27s would give 210 amp compared to the 225 for the T105 - 7% higher for the T105.
Perhaps the point I should have made clearer was whether James was simply replacing factory installed Group 27 batteries with 6 VDC. Sure it is possible to get a less common size of 12 VDC that would mimic the performance of the 6 VDC but it too would likely require a modification of the mount assuming the space is tall enough for the larger T105 or its 12 VDC equivalent. I suppose it all comes down to volume of the battery case and weight of lead. I did talk to a technical rep at Trojan before I switched to the T105s and he said to expect more low voltage discharge cycles from the T105s than their equivalent Group 27 batteries because that is what they were designed to do. I can only take him at his word.
I'm not sure this discussion helps much. I do know from experience that it pays to buy brand name batteries and to follow the manufactures maintenance recommendations if you expect long life.